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Comparison of <t>nucleotide</t> <t>sequence</t> homology between 10 goose circovirus strains and reference strains. A shows the results of whole-genome nucleotide homology analysis. B shows the results of Rep protein nucleotide homology analysis. C shows the Results of Cap protein nucleotide homology analysis.The nucleotide sequences of 10 GoCV strains were processed using DNASTAR software to obtain the complete genome, Rep gene, and Cap gene sequences. Corresponding whole genome, Rep, and Cap sequences of reference strains were retrieved from the <t>NCBI</t> database and similarly processed using DNASTAR software. All nucleotide sequence homology analyses were performed using MegAlign, employing the ClustalW Multiple Sequence Alignment program for sequence alignment.
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Comparison of nucleotide sequence homology between 10 goose circovirus strains and reference strains. A shows the results of whole-genome nucleotide homology analysis. B shows the results of Rep protein nucleotide homology analysis. C shows the Results of Cap protein nucleotide homology analysis.The nucleotide sequences of 10 GoCV strains were processed using DNASTAR software to obtain the complete genome, Rep gene, and Cap gene sequences. Corresponding whole genome, Rep, and Cap sequences of reference strains were retrieved from the NCBI database and similarly processed using DNASTAR software. All nucleotide sequence homology analyses were performed using MegAlign, employing the ClustalW Multiple Sequence Alignment program for sequence alignment.

Journal: Poultry Science

Article Title: Identification and genetic evolutionary analysis of goose circovirus in Shandong and neighboring provinces in China in 2024

doi: 10.1016/j.psj.2025.105826

Figure Lengend Snippet: Comparison of nucleotide sequence homology between 10 goose circovirus strains and reference strains. A shows the results of whole-genome nucleotide homology analysis. B shows the results of Rep protein nucleotide homology analysis. C shows the Results of Cap protein nucleotide homology analysis.The nucleotide sequences of 10 GoCV strains were processed using DNASTAR software to obtain the complete genome, Rep gene, and Cap gene sequences. Corresponding whole genome, Rep, and Cap sequences of reference strains were retrieved from the NCBI database and similarly processed using DNASTAR software. All nucleotide sequence homology analyses were performed using MegAlign, employing the ClustalW Multiple Sequence Alignment program for sequence alignment.

Article Snippet: After performing sequence comparison with NCBI (National Center for Biotechnology Information), the correctly sequenced GoCV gene sequences were aligned with known sequences from GenBank.

Techniques: Comparison, Sequencing, Software